Change Log

All notable changes to this project are documented in this file.

2.1.0 - 2023-11-03

Added

  • Add support for Python 3.12

2.0.1 - 2023-09-27

Added

  • Provide an example of gene lengths file in the README.rst

Fixed

  • Fix fit methods to match sklearn signature

  • Fix LibrarySize to always return np.array in private functions

  • Fix get_norm_factors to follow the set_output config

  • Remove leftovers of as_frame parameter

2.0.0 - 2023-06-21

Added

  • Implementation of the following methods:

    • CPM

    • FPKM

    • TPM

    • UQ

    • CUF

    • TMM

    • CTF

  • Add a “toy” and GTEx dataset

  • Add command line interface for all of the above methods

  • Add tests

  • Support calculation of gene lengths from GTf or gene lengths file in TPM / FPKM