Change Log

All notable changes to this project are documented in this file.

2.2.0 - 2025-01-29

Added

• Add support for Python 3.13

Changed

• Remove support for Python 3.8

• Update deprecated sklearn validation methods

2.1.0 - 2023-11-03

Added

• Add support for Python 3.12

2.0.1 - 2023-09-27

Added

• Provide an example of gene lengths file in the README.rst

Fixed

• Fix fit methods to match sklearn signature

• Fix LibrarySize to always return np.array in private functions

• Fix get_norm_factors to follow the set_output config

• Remove leftovers of as_frame parameter

2.0.0 - 2023-06-21

Added

• Implementation of the following methods:

  • CPM

  • FPKM

  • TPM

  • UQ

  • CUF

  • TMM

  • CTF

• Add a “toy” and GTEx dataset

• Add command line interface for all of the above methods

• Add tests

• Support calculation of gene lengths from GTf or gene lengths file in TPM / FPKM