API Reference

Normalization methods

CPM	Counts per million (CPM) normalization.
FPKM	Fragments per kilo-base million (FKPM) normalization.
TPM	Transcripts per kilo-base million (TPM) normalization.
UQ	Upper quartile (UQ) normalization.
CUF	Counts adjusted with Upper quartile factors normalization.
TMM	Trimmed mean of M-values (TMM) normalization.
CTF	Counts adjusted with TMM factors normalization.

Datasets

datasets.load_toy_data	Load a minimal, made-up raw count RNA-seq dataset.
datasets.load_gtex	Load a real RNA-seq dataset from GTFx project.