rnanorm.datasets.load_toy_data¶
- rnanorm.datasets.load_toy_data()[source]¶
Load a minimal, made-up raw count RNA-seq dataset.
This dataset is not representative of any real RNA-seq dataset. However, it is small and has just enough complexity to showcase the effects of methods. It is also simple enough to make calculation by hand possible.
- Return type:
Examples
>>> from rnanorm.datasets import load_toy_data >>> dataset = load_toy_data() >>> dataset.exp Gene_1 Gene_2 Gene_3 Gene_4 Gene_5 Sample_1 200 300 500 2000 7000 Sample_2 400 600 1000 4000 14000 Sample_3 200 300 500 2000 17000 Sample_4 200 300 500 2000 2000 >>> # TPM and FPKM normalization also require GTF file >>> dataset.gtf_path PosixPath('/Users/me/.../toy.gtf')