rnanorm.datasets.load_gtex¶
- rnanorm.datasets.load_gtex()[source]¶
Load a real RNA-seq dataset from GTFx project.
Dataset is sampled to contain just chr21 and first 30 samples from GTEx lung V8.
- Return type:
Examples
>>> from rnanorm.datasets import load_gtex >>> dataset = load_gtex() >>> dataset.exp ENSG00000141956.13 ENSG00000141959.16 ... GTEX-111CU-0326-SM-5GZXO 871 8129 ... GTEX-111FC-1126-SM-5GZWU 852 7076 ... GTEX-111VG-0726-SM-5GIDC 912 11016 ... ... ... ... ... >>> # TPM and FPKM normalization also require GTF file >>> dataset.gtf_path PosixPath('/Users/.../gencode.v26.annotation.chr21.gtf.gz')